Supplemental Table 6: Summary of the sequence variants identified for each genotype and tissue type						
VNDL Leaf			
Variants Identified	Unimod	# of Variant Peptides	# of Variant Spectra (Summed SpC)
A[16]	Ala->Ser	667	10266
F[16]	Oxidation; Phe->Tyr	243	3325
M[-3]	Met->Lys; Met->Gln	130	1959
N[-27]	Asn->Ser	127	1319
A[32]	Ala->Cys	76	1133
S[14]	Methyl; Ser->Thr	16	1129
A[28]	Ala->Val	33	744
N[-13]	Asn->Thr	7	671
S[41]	Ser->Lys; Ser->Gln	46	646
V[14]	Val->Xle	67	612
L[-14]	Xle->Val	18	580
V[32]	Val->Met	43	534
V[2]	Val->Thr	59	511
G[30]	Gly->Ser	37	502
S[-16]	Deoxy; Ser->Ala	38	441
S[42]	Acetyl; Ser->Glu	41	426
E[27]	Glu->Arg	10	330
N[15]	Methyl+Deamidated; Asn->Glu	35	323
T[-2]	Didehydro; Thr->Val	36	280
D[13]	Asp->Lys; Asp->Gln	26	271
T[13]	Methylamine; Thr->Asn	25	256
T[-30]	Thr->Ala	23	254
S[-30]	Ser->Gly	15	238
I[-14]	Xle->Val	21	215
M[-18]	Met->Xle	20	208
L[18]	Xle->Met	19	207
R[-28]	Arg->Lys; Arg->Gln	26	207
Y[-26]	Tyr->His	25	205
K[-14]	Lys->Asn	11	199
G[14]	Gly->Ala	26	188
T[-14]	Thr->Ser	22	180
V[-28]	Val->Ala	21	164
A[30]	Ala->Thr	18	152
E[-14]	Glu->Asp	15	152
D[14]	Methyl; Asp->Glu	18	142
S[27]	Ser->Asn; ethylamino	22	137
F[-16]	Phe->Met	19	117
Q[3]	Gln->Met	18	115
H[-9]	His->Gln; His->Lys	2	111
N[23]	Asn->His	10	110
Q[-13]	Gln->Asp	14	105
E[-15]	Glu->Asn	17	102
F[-34]	Phe->Xle	11	89
N[14]	Methyl; Asn->Lys; Asn->Gln	15	89
I[18]	Xle->Met	13	75
L[34]	Xle->Phe; Leu->MetOx	14	75
K[-41]	Lys->Ser	10	72
A[-14]	Ala->Gly	13	67
Q[28]	Gln->Arg	6	62
W[-39]	Trp->Phe	8	60
N[-57]	Asn->Gly	2	57
K[28]	Dimethyl; Formyl; Delta:H(4)C(2); Ethyl; Lys->Arg	9	51
D[-28]	Asp->Ser	7	47
Q[9]	Gln->His	6	47
E[-42]	Glu->Ser	9	46
C[82]	Unknown	2	43
Q[-41]	Gln->Ser	10	41
Q[1]	Deamidated; Gln->Glu	8	39
I[34]	Xle->Phe	7	38
Y[-16]	Tyr->Phe	7	35
H[-8]	His->Glu	2	31
N[42]	Asn->Arg	7	31
R[-27]	Arg->Glu	6	31
R[-19]	Arg->His	5	22
R[-42]	Arg->Orn; Arg->Asn	2	22
F[39]	Phe->Trp	3	20
H[-23]	His->Asn	3	19
H[26]	Delta:H(2)C(2); His->Tyr	3	18
E[8]	Glu->His	3	17
Q[-14]	Gln->Asn	4	16
M[-32]	Met->Val	3	12
Y[23]	Tyr->Trp	1	4
H[19]	His->Arg	1	3