from cleavage_seq_selection import *
#this command to call functions from cleavage_seq_selection.py
# all filenames are subject to be modified by users

inputS1 = [["input1.csv", "Fr.A2"], 
    ["input2.csv", "Fr.B0"],
    ["input3.csv", "Fr.B1"],
    ["input4.csv.csv", "Fr.B3"]]
#this command declares input files for selection step 1 in cleavage_seq_selection.py

outputS1 = "qExHF01_05531_34_GluC_15uL.csv"
#this command declares output filename for selection step 1 in cleavage_seq_selection.py

CS_select1(inputS1, outputS1)
#this command calls for execution of for selection step 1 in cleavage_seq_selection.py



dbase = "database_name.csv"
outputS2a = "Non-Prime.csv"
outputS2b = "Prime.csv"
outputS2c = "NPrime_potent.csv"
outputS2d = "Prime_potent.csv"
#these commands declare input and output files for selection step 2 in cleavage_seq_selection.py

CS_select2(dbase, outputS1, outputS2a, outputS2b, outputS2c, outputS2d)
#this command calls for execution of for selection step 1 in cleavage_seq_selection.py


outputS3a = "NPrime_CS.csv"
outputS3b = "Prime_CS.csv"
#these commands declare input and output files for selection step 3 in cleavage_seq_selection.py

CS_select3a(outputS2c, outputS3a)
CS_select3b(outputS2d, outputS3b)
#these commands call for execution of for selection step 3a and 3b in cleavage_seq_selection.py



CS_select4(outputS3a, outputS3b, "Non-redundant_CSeq.csv")
#this command calls for execution of for selection step 4 in cleavage_seq_selection.py