Universal Actuator for Efficient Silencing of Escherichia coli Genes Based on Convergent Transcription
Resistant to Rho-Dependent Termination
Posted on 2020-06-11 - 16:33
Dynamic
control is a distinguished strategy in modern metabolic
engineering, in which inducible convergent transcription is an attractive
approach for conditional gene silencing. Instead of a simple strong
“reverse” (r-) promoter, a three-component
actuator has been developed for constitutive genes silencing. These
actuators, consisting of r-promoters with different
strengths, the ribosomal transcription antitermination-inducing sequence rrnG-AT, and the RNase III processing site, were inserted
into the 3′-UTR of three E. coli metabolic
genes. Second and third actuator components were important to improve
the effectiveness and robustness of the approach. The maximal silencing
folds achieved for gltA, pgi, and ppc were approximately 7, 11, and >100, respectively.
Data
were analyzed using a simple model that considered RNA polymerase
(RNAP) head-on collisions as the unique reason for gene silencing
and continued transcription after collision with only one of two molecules.
It was previously established that forward (f-) RNAP
with a trailing ribosome was approximately 13-times more likely to
continue transcription after head-on collision than untrailed r-RNAP which is sensitive to Rho-dependent transcription
termination (RhoTT). According to the current results, this bias in
complex stabilities decreased to no more than (3.0–5.7)-fold
if r-RNAP became resistant to RhoTT. Therefore, the
developed constitutive actuator could be considered as an improved
tool for controlled gene expression mainly due to the transfer of r-transcription into a state that is resistant to potential
termination and used as the basis for the design of tightly regulated
actuators for the achievement of conditional silencing.
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Krylov, Alexander A.; Shapovalova, Valeriya V.; Miticheva, Elizaveta A.; Shupletsov, Mikhail S.; Mashko, Sergey V. (2020). Universal Actuator for Efficient Silencing of Escherichia coli Genes Based on Convergent Transcription
Resistant to Rho-Dependent Termination. ACS Publications. Collection. https://doi.org/10.1021/acssynbio.9b00463