Deciphering the Molecular Terms of Arp2/3 Allosteric Regulation from All-Atom Simulations and Dynamical Network Theory
mediaposted on 02.06.2021, 18:36 by Sara Laporte, Alessandra Magistrato
The Arp2/3 molecular machine stimulates the generation of branched actin networks at the cytosolic surface of cellular membranes. Arp2/3 is thus pivotal for cell motility and migration, and its aberrant function is implicated in cancer invasion and metastasis. Here, all-atom multi μs-long molecular dynamics simulations and dynamical NetWork Analysis (NWA) unprecedentedly disclose the molecular terms of Arp2/3 regulation (activation/inhibition) by positive/negative allosteric modulators. After identifying the crucial structural elements underlying Arp2/3′s conformational transition toward its active actin-polymerization-competent state, we decrypt the activating signaling paths heading from the allosteric effector (ATP) binding sites to these pivotal regions, also elucidating how small-molecule inhibitors scramble this signal-exchange. As a result, while ATP-induced signaling triggers a harmonious conformational transition toward active Arp2/3, the inhibitors disturb these information channels, desynchronizing Arp2/3 functional movements, thus hindering its activation. Our outcomes supply a conceptual basis for devising small-molecule inhibitors to block infiltrative cancer migration.
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NetWork Analysisall-atom multi μ s-longMolecular TermsAll-Atom Simulationscytosolic surfaceArpactin networkssmall-molecule inhibitorsbinding sitesactin-polymerization-competent stateNWAblock infiltrative cancer migrationcell motilityATPDynamical Network Theoryinformation channelsallosteric effectorcancer invasiondynamics simulationsoutcomes supplysmall-molecule inhibitors scramble