Cellular Signaling Circuits Interfaced with Synthetic, Post-Translational, Negating Boolean Logic Devices
mediaposted on 2015-12-17, 04:41 authored by Shiva Razavi, Steven Su, Takanari Inoue
A negating functionality is fundamental to information processing of logic circuits within cells and computers. Aiming to adapt unutilized electronic concepts to the interrogation of signaling circuits in cells, we first took a bottom-up strategy whereby we created protein-based devices that perform negating Boolean logic operations such as NOT, NOR, NAND, and N-IMPLY. These devices function in living cells within a minute by precisely commanding the localization of an activator molecule among three subcellular spaces. We networked these synthetic gates to an endogenous signaling circuit and devised a physiological output. In search of logic functions in signal transduction, we next took a top–down approach and computationally screened 108 signaling pathways to identify commonalities and differences between these biological pathways and electronic circuits. This combination of synthetic and systems approaches will guide us in developing foundations for deconstruction of intricate cell signaling, as well as construction of biomolecular computers.
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systems approachesNegating Boolean Logic DevicesA negating functionalitylogic functionssignal transductionCellular Signaling Circuits InterfacedNANDnegating Boolean logic operationsactivator moleculebiomolecular computerssubcellular spacesdevices functioninformation processingpathwaylogic circuitsNOTNOR