posted on 2024-05-08, 10:14authored byLuka Kavčič, Gregor Ilc, Baifan Wang, Kristina Vlahoviček-Kahlina, Ivanka Jerić, Janez Plavec
In this work, we have applied the concept of α-hydrazino
acid insertion in a peptide sequence as a means of structurally organizing
a potential protein–protein interactions (PPI) inhibitor. Hydrazino
peptides characterized by the incorporation of an α-hydrazino
acid at specific positions introduce an additional nitrogen atom into
their backbone. This modification leads to a change in the electrostatic
properties of the peptide and induces the restructuring of its hydrogen
bonding network, resulting in conformational changes toward more stable
structural motifs. Despite the successful use of synthetic hydrazino
oligomers in binding to nucleic acids, the structural changes due
to the incorporation of α-hydrazino acid into short natural
peptides in solution are still poorly understood. Based on NMR data,
we report structural models of p53-derived hydrazino peptides with
elements of localized peptide structuring in the form of an α-,
β-, or γ-turn as a result of hydrazino modification in
the peptide backbone. The modifications could potentially lead to
the preorganization of a helical secondary peptide structure in a
solution that is favorable for binding to a biological receptor. Spectroscopically,
we observed that the ensemble averaged rapidly interconverting conformations,
including isomerization of the E–Z hydrazide bond. This further
increases the adaptability by expanding the conformational space of
hydrazine peptides as potential protein–protein interaction
antagonists.