posted on 2016-02-19, 23:19authored byHendrik Heinz, Tzu-Jen Lin, Ratan Kishore Mishra, Fateme
S. Emami
The complexity of the molecular recognition and assembly
of biotic–abiotic interfaces on a scale of 1 to 1000 nm can
be understood more effectively using simulation tools along with laboratory
instrumentation. We discuss the current capabilities and limitations
of atomistic force fields and explain a strategy to obtain dependable
parameters for inorganic compounds that has been developed and tested
over the past decade. Parameter developments include several silicates,
aluminates, metals, oxides, sulfates, and apatites that are summarized
in what we call the INTERFACE force field. The INTERFACE force field
operates as an extension of common harmonic force fields (PCFF, COMPASS,
CHARMM, AMBER, GROMACS, and OPLS-AA) by employing the same functional
form and combination rules to enable simulations of inorganic–organic
and inorganic–biomolecular interfaces. The parametrization
builds on an in-depth understanding of physical–chemical properties
on the atomic scale to assign each parameter, especially atomic charges
and van der Waals constants, as well as on the validation of macroscale
physical–chemical properties for each compound in comparison
to measurements. The approach eliminates large discrepancies between
computed and measured bulk and surface properties of up to 2 orders
of magnitude using other parametrization protocols and increases the
transferability of the parameters by introducing thermodynamic consistency.
As a result, a wide range of properties can be computed in quantitative
agreement with experiment, including densities, surface energies,
solid–water interface tensions, anisotropies of interfacial
energies of different crystal facets, adsorption energies of biomolecules,
and thermal and mechanical properties. Applications include insight
into the assembly of inorganic–organic multiphase materials,
the recognition of inorganic facets by biomolecules, growth and shape
preferences of nanocrystals and nanoparticles, as well as thermal transitions
and nanomechanics. Limitations and opportunities for further development
are also described.