bi300663r_si_001.pdf (396.71 kB)
The Catalytic Serine of meta-Cleavage Product Hydrolases Is Activated Differently for C–O Bond Cleavage Than for C–C Bond Cleavage
journal contribution
posted on 2012-07-24, 00:00 authored by Antonio
C. Ruzzini, Geoff P. Horsman, Lindsay D. Eltismeta-Cleavage product (MCP) hydrolases
catalyze
C–C bond fission in the aerobic catabolism of aromatic compounds
by bacteria. These enzymes utilize a Ser-His-Asp triad to catalyze
hydrolysis via an acyl–enzyme intermediate. BphD, which catalyzes
the hydrolysis of 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid (HOPDA)
in biphenyl degradation, catalyzed the hydrolysis of an ester analogue, p-nitrophenyl benzoate (pNPB), with a kcat value (6.3 ± 0.5 s–1) similar
to that of HOPDA (6.5 ± 0.5 s–1). Consistent
with the breakdown of a shared intermediate, product analyses revealed
that BphD catalyzed the methanolysis of both HOPDA and pNPB, partitioning
the products to benzoic acid and methyl benzoate in similar ratios.
Turnover of HOPDA was accelerated up to 4-fold in the presence of
short, primary alcohols (methanol > ethanol > n-propanol),
suggesting that deacylation is rate-limiting during catalysis. In
the steady-state hydrolysis of HOPDA, kcat/Km values were independent of methanol
concentration, while both kcat and Km values increased with methanol concentration.
This result was consistent with a simple model of nucleophilic catalysis.
Although the enzyme could not be saturated with pNPB at methanol concentrations
of >250 mM, kobs values from the steady-state
turnover of pNPB at low methanol concentrations were also consistent
with a nucleophilic mechanism of catalysis. Finally, transient-state
kinetic analysis of pNPB hydrolysis by BphD variants established that
substitution of the catalytic His reduced the rate of acylation by
more than 3 orders of magnitude. This suggests that for pNPB hydrolysis,
the serine nucleophile is activated by the His-Asp dyad. In contrast,
rapid acylation of the H265Q variant during C–C bond cleavage
suggests that the serinate forms via a substrate-assisted mechanism.
Overall, the data indicate that ester hydrolysis proceeds via the
same acyl–enzyme intermediate as that of the physiological
substrate but that the serine nucleophile is activated via a different
mechanism.