posted on 2020-12-08, 09:04authored byNatalia
B. Pigni, Kevin L. Clark, Warren F. Beck, José A. Gascón
The orange carotenoid protein (OCP)
is involved in the photoprotective
processes in cyanobacteria via nonphotochemical quenching. Triggered
by blue-green light absorption, the carotenoid chromophore undergoes
translocation, displacing around 12 Å from the C-terminal domain
(CTD) to the N-terminal domain (NTD). The detailed molecular rearrangements
that occur within the carotenoid and the protein during this process
remain largely elusive. By using a combination of molecular dynamics,
well-tempered metadynamics, and hybrid quantum mechanical/molecular
mechanical (QM/MM) calculations, we were able to mimic the translocation
of the carotenoid from the inactive OCPO and obtain metastable
red-shifted states in the photoactivation mechanism, replicating the
λmax values of reference experimental spectra. In
addition, our simulations give insight into the structure of the red-shifted
form of the inactive state of OCP.