posted on 2019-12-20, 12:10authored byLaura R. Stingaciu, Ralf Biehl, Do Changwoo, Dieter Richter, Andreas M. Stadler
Urea is a strong denaturing osmolyte that disrupts noncovalent
bonds in proteins. Here, we present a small-angle neutron scattering
(SANS) and neutron spin–echo spectroscopy (NSE) study on the
structure and dynamics of the intrinsically disordered myelin basic
protein (MBP) denatured by urea. SANS results show that urea-denatured
MBP is more compact than ideal polymers, while its secondary structure
content is entirely lost. NSE experiments reveal concomitantly an
increase of the relaxation time and of the amplitude of internal motions
in urea-denatured MBP as compared to native MBP. If interpreted in
terms of the Zimm model including internal friction (ZIF), the internal
friction parameter decreased by a factor of 6.5. Urea seems to not
only smooth local energy barriers, reducing internal friction on a
local scale, but also significantly reduces the overall depth of the
global energy landscape. This leads to a nearly complete loss of restoring
forces beyond entropic forces and in turn allows for larger motional
amplitudes. Obviously, the noncovalent H-bonds are largely eliminated,
driving the unfolded protein to be more similar to a synthetic polymer.