posted on 2016-02-20, 11:11authored byNajoua Derbel, Igor Clarot, Maxime Mourer, Jean-Bernard Regnouf-de-Vains, Manuel F. Ruiz-López
We analyze the structure, hydration, and pKa values of p-guanidinoethyl-phenol through
a combined experimental and theoretical study. These issues are relevant
to understand the mechanism of action of the tetrameric form, the
antibacterial compound tetra-p-guanidinoethyl-calix[4]arene
(Cx1). The investigated system can also be useful to model other pharmaceutical
drugs bearing a guanidine function in the vicinity of an ionizable
group and the effect of arginine on the pKa of vicinal ionizable residues (in particular tyrosine) in peptides.
The p-guanidinoethyl-phenol monomer (mCx1) has two
ionizable groups. One important particularity of this system is that
it exhibits high molecular flexibility that potentially leads to enhanced
stabilization in folded structures by direct, strong Coulombic interactions
between the ionizable groups. The first pKa corresponding to ionization of the −OH group has experimentally
been shown to be only slightly different from usual values in substituted
phenols. However, because of short-range Coulombic interactions, the
role of intramolecular interactions and solvation effects on the acidities
of this compound is expected to be important and it has been analyzed
here on the basis of theoretical calculations. We use a discrete-continuum
solvation model together with quantum-mechanical calculations at the
B3LYP level of theory and the extended 6-311+G(2df,2p) basis set.
Both intra- and intermolecular effects are very large (∼70
kcal/mol) but exhibit an almost perfect compensation, thus explaining
that the actual pKa of mCx1 is close to
free phenol. The same compensation of environmental effects applies
to the second pKa that concerns the guanidinium
group. Such a pKa could not be determined
experimentally with standard titration techniques and in fact the
theoretical study predicts a value of 14.2, that is, one unit above
the pKa of the parent ethyl-guanidinium
molecule.