High-Dimensional Fluctuations in Liquid Water: Combining Chemical Intuition with Unsupervised Learning
journal contributionposted on 26.04.2022, 22:03 authored by Adu Offei-Danso, Ali Hassanali, Alex Rodriguez
The microscopic description of the local structure of water remains an open challenge. Here, we adopt an agnostic approach to understanding water’s hydrogen bond network using data harvested from molecular dynamics simulations of an empirical water model. A battery of state-of-the-art unsupervised data-science techniques are used to characterize the free-energy landscape of water starting from encoding the water environment using local atomic descriptors, through dimensionality reduction and finally the use of advanced clustering techniques. Analysis of the free energy under ambient conditions was found to be consistent with a rough single basin and independent of the choice of the water model. We find that the fluctuations of the water network occur in a high-dimensional space, which we characterize using a combination of both atomic descriptors and chemical-intuition-based coordinates. We demonstrate that a combination of both types of variables is needed in order to adequately capture the complexity of the fluctuations in the hydrogen bond network at different length scales both at room temperature and also close to the critical point of water. Our results provide a general framework for examining fluctuations in water under different conditions.
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rough single basinmolecular dynamics simulationshydrogen bond networkdifferent length scalesart unsupervised dataadvanced clustering techniqueswater network occurunderstanding water ’empirical water modelcombining chemical intuitionwater modelunsupervised learningscience techniquesdifferent conditionswater startingwater remainsliquid waterroom temperatureresults provideopen challengemicroscopic descriptionlocal structuregeneral frameworkenergy landscapedimensionality reductiondimensional spacecritical pointbased coordinatesatomic descriptorsambient conditionsalso closeagnostic approachadequately capture