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Coupled Methyl Group Epimerization and Reduction by Polyketide Synthase Ketoreductase Domains. Ketoreductase-Catalyzed Equilibrium Isotope Exchange

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journal contribution
posted on 06.11.2013, 00:00 by Ashish Garg, Chaitan Khosla, David E. Cane
Incubation of [2-2H]-(2S,3R)-2-methyl-3-hydroxy­pentanoyl-SACP ([2-2H]-1a) with the epimerizing keto­reductase domain EryKR1 in the presence of a catalytic amount NADP+ (0.05 equiv) resulted in time- and cofactor-dependent washout of deuterium from 1a, as a result of equilibrium isotope exchange of transiently generated [2-2H]-2-methyl-3-keto­pentanoyl-ACP. Incubations of [2-2H]-(2S,3S)-2-methyl-3-hydroxy-pentanoyl-SACP with RifKR7 and with NysKR1 also resulted in time-dependent loss of deuterium. By contrast, incubations of [2-2H]-(2R,3S)-2-methyl-3-hydroxy­pentanoyl-SACP and [2-2H]-(2R,3R)-2-methyl-3-hydroxy­pentanoyl-SACP with the non-epimerizing keto­reductase domains EryKR6 and TylKR1, respectively, did not result in any significant washout of deuterium. The isotope exchange assay directly establishes that specific polyketide synthase keto­reductase domains also have an intrinsic epimerase activity, thus enabling mechanistic analysis of a key determinant of polyketide stereo­complexity.