posted on 2023-01-21, 02:05authored byDongdong Meng, Meixia Liu, Hao Su, Haiyan Song, Lijie Chen, Qiangzi Li, Ya-nan Liu, Zhiguang Zhu, Weidong Liu, Xiang Sheng, Chun You, Yi-Heng P. Job Zhang
Nicotinamide adenine dinucleotide (NAD(P)+)-dependent
oxidoreductases have been widely employed as biocatalysts for numerous
applications, such as in vitro biomanufacturing and
biosensors. The application of biomimetic nicotinamide coenzymes (BNCs)
in an enzymatic redox cascade constitutes a promising alternative
that can eliminate the need for expensive natural NAD(P)+ coenzymes. Herein, we demonstrated that the coenzyme engineering
of glucose-6-phosphate dehydrogenase from Zymomonas
mobilis (ZmG6PDH) enhanced its catalytic efficiency
(kcat/Km)
on oxidized nicotinamide mononucleotide (NMN+). Compared
with the wild-type (WT) enzyme, the optimal mutant R4 exhibited a
112-fold enhancement in catalytic efficiency on NMN+, with
4.7 × 103 and 2.6 × 103-fold change
in the two coenzyme specificity values ([kcat/Km]NMN+/[kcat/Km]NAD+ and [kcat/Km]NMN+/[kcat/Km]NADP+), respectively.
To obtain insights into the structure–function relationship
of the enzyme and its mutant, we determined the crystal structures
of WT G6PDH (apo-WT) and the complex of mutant R4 and NMN+ (R4:NMN+) and performed molecular dynamics simulations
of the ternary complexes of the G6PDH/substrate (glucose-6-phosphate,
G6P)/coenzyme. The results revealed that the helix region of the coenzyme-binding
Rossmann-like domain in mutant R4 was nearer to the active site than
the wild-type enzyme, thus creating a more compact substrate/coenzyme-binding
site to favor the binding of the substrate G6P and NMN+. Furthermore, a glucose biosensor based on the glucokinase (GK)/G6PDH-NMN+ biosystem without cryopreservation was constructed using
NMN+ as the coenzyme. These results indicate that the combination
of BNCs and oxidoreductases can be widely employed in biosensors,
biocatalysis, and in vitro biomanufacturing.