posted on 2020-03-10, 13:16authored byDiogo Santos-Martins, Stefano Forli
A hydrogen bond (HB) is an essential
interaction in countless phenomena,
regulating the chemistry of life. HBs are characterized by two features,
strength and directionality, with a high degree of heterogeneity across
different chemical groups. These characteristics are dependent on
the electronic configuration of the atoms involved in the interaction,
which, in turn, is influenced strongly by the local molecular environment.
Studies based on the analysis of HB in the solid phase, such as X-ray
crystallography, suffer from significant biases due to packing forces.
These will tend to better describe strong HBs at the expenses of weak
ones, which will be either distorted or under-represented. Using quantum
mechanics (QM), we calculated interaction energies for about a hundred
acceptors and donors in a rigorously defined set of geometries. We
performed 180,000 independent QM calculations, covering all relevant
angular components, mapping strength and directionality in a context
free from external biases, with both single-site and cooperative HBs.
By quantifying directionality, we show that there is no correlation
with strength; therefore, these two components need to be addressed
separately. Results demonstrate that there are very strong HB acceptors
(e.g., dimethyl sulfoxide) with nearly isotropic interactions and
weak ones (e.g., thioacetone) with a sharp directional profile. Similarly,
groups can have comparable directional propensity but be very distant
in the strength spectrum (e.g., thioacetone and pyridine). Results
provide a new perspective on the way HB directionality is described,
with implications for biophysics and molecular recognition that ultimately
can influence chemical biology, protein engineering, and drug design.