jp9b11096_si_001.pdf (546.27 kB)
Biological Nanopore Probe: Probing of Viscous Solutions in a Confined Nanospace
journal contribution
posted on 2020-02-25, 20:44 authored by Masaki Matsushita, Kan Shoji, Natsumi Takai, Ryuji KawanoThis paper describes
a nanospace probing system constructed with
a pore-forming toxin and a hairpin DNA (hpDNA) molecule. The single
hpDNA molecule can be inserted and can move in the confined nanospace
of the alpha-hemolysin (αHL) pore. The molecular motion of the
hpDNA can be determined based on the fluctuation of the blocking current
via channel current measurements. Using this system, we investigated
the effect of viscosity of the aqueous solution in the macrospace
(bulk) and in the confined nanospace with a small molecule (glycerol)
and a polymer (PEG600). The molecular motion of the hpDNA in the nanospace
differed in glycerol and PEG600 solutions, while the viscosity remained
the same in the bulk solution. The fundamental factors for the viscosity
in glycerol and PEG600 solutions are hydrogen bonding and the entanglement
of polymer chains, respectively. This difference in factors becomes
significant in confined nanospaces, and our system allows us to observe
its effect. Additionally, we constructed a spatially resolved nanopore
probe integrated into a gold nanoneedle. The αHL–hpDNA
nanoprobe system was constructed with the nanoneedle and can be used
to monitor the nanospace with nanometer spatial resolution.