Analysis of Interdependent Kinetic Controls of Fatty Acid Synthases
journal contributionposted on 31.10.2018, 00:00 by Alex Ruppe, Jerome M. Fox
Biocatalytic systems (e.g., multienzyme pathways or complexes) enable the conversion of simple sugars into complex products under ambient conditions and, thus, represent promising platforms for the synthesis of renewable fuels and chemicals. Unfortunately, to date, many of these systems have proven difficult to engineer without a detailed understanding of the kinetic relationships that regulate the concerted action of their constituent enzymes. This study develops a mechanistic kinetic model of the fatty acid synthase (FAS) of Escherichia coli and uses that model to determine how different FAS components work together to control the production of free fatty acidsprecursors to a wide range of oleochemicals. Perturbational analyses indicate that the modification or overexpression of a single FAS component can depress fatty acid production (a commonly observed phenomenon) by sequestering the proteins with which it interacts and/or by depleting common substrate pools. Compositional studies, in turn, suggest that simple changes in the ratios of FAS components can alter the average length of fatty acids but show that specialized enzymes (i.e., highly specific ketoacyl synthases or thioesterases) are required for narrow product profiles. Intriguingly, a sensitivity analysis indicates that two components primarily influenceand, thus, enable fine control overtotal production, but suggests that the enzymes that regulate product profile are more broadly influential. Findings thus reveal the general importance of kinetic considerations in efforts to engineer fatty acid biosynthesis and provide strategiesand a kinetic modelfor incorporating those considerations into FAS designs.
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considerationFAS componentsambient conditionsproduct profileSynthases Biocatalytic systemsketoacyl synthasesCompositional studiesFAS designsproduct profilesacid biosynthesissensitivity analysisacid productionFAS componentEscherichia coliFAS components worksubstrate poolsconstituent enzymesacid synthaseInterdependent Kinetic ControlsPerturbational analysesmodel