Combined Force-Frequency Sampling for Simulation of Systems Having Rugged Free Energy Landscapes
journal contributionposted on 10.02.2020 by Emre Sevgen, Ashley Z. Guo, Hythem Sidky, Jonathan K. Whitmer, Juan J. de Pablo
Any type of content formally published in an academic journal, usually following a peer-review process.
An adaptive, machine learning-based sampling method is presented for simulation of systems having rugged, multidimensional free energy landscapes. The method’s main strength resides in its ability to learn both from the frequency of visits to distinct states and the generalized force estimates that arise in a system as it evolves in phase space. This is accomplished by introducing a self-integrating artificial neural network, which generates an estimate of the free energy directly from its derivatives. The usefulness of the proposed combined approach is examined in the context of two concrete examples, namely, an alanine dipeptide molecule in water and a polymer diffusing through a narrow pore. This new method is found to be robust, faster, and more accurate than approaches that rely only on frequency-based or generalized force-based estimations. After combining the proposed approach with overfill protection and support for sparse data storage and training, the method is shown to be more effective than comparable, previously available techniques and capable of scaling efficiently to larger numbers of collective variables.