Upregulation of TDRD1 Promotes the Sexual Maturation in Allotetraploids Hybridized from Red Crucian Carp (Carassius auratus Red var) (♀) and Common Carp (Cyprinus carpio L) (♂)

Allotetraploid hybrids of Red Crucian Carp (Carassius auratus red var, abbreviated as RCC) (♀) and common Carp (Cyprinus carpio L, abbreviated as CC) (♂) is a species produced by distant hybridization. In this study, SWATH mass spectrometry (SWATH-MS) was applied for quantitative proteomics profiling of gonad tissues of allotetraploids and their parents RCC (♀) and CC (♂). A total of 2338 unique proteins were identified in our proteomic profiling by SWATH-MS. Gene enrichment and network analysis based on differentially expressed proteins revealed some metabolic enzymes involved in gonad growth and development of allotetraploids. Especially, the upregulated gene TDRD1 (ratio = 2.59, p = 0.02) in allotetraploids plays a significant role in spermatogenesis, which could speed up the sexual maturation during the process of gonad growth and development. Protein–protein interaction and pathway analysis further suggested that TDRD1 served as a hub protein in metabolic-related pathways and networks. It could regulate gonad development via regulating metabolic pathways in a synergistic way with surrounding regulatory factors including CS, GPIA, PGK1, and IDH2. In addition, TDRD1 could directly regulate spermatogenesis in conjunction with PIWIL1, PIWIL2, and VASA. Quantitative proteomics integrated with network analysis explored the molecular mechanism in that TDRD1 regulated sexual maturation, development, and growth of allotetraploids in a synergetic way with metabolic genes and pathways.