Development of the GENIPOL European Flounder (Platichthys flesus) Microarray and Determination of Temporal Transcriptional Responses to Cadmium at Low Dose.
datasetposted on 15.10.2006, 00:00 by Tim D. Williams, Amer M. Diab, Stephen G. George, Rita E. Godfrey, Victoria Sabine, Ana Conesa, Steven D. Minchin, Phil C. Watts, James K. Chipman
We have constructed a high density, 13 270-clone cDNA array for the sentinel fish species European flounder (Platichthys flesus), combining clones from suppressive subtractive hybridization and a liver cDNA library; DNA sequences of 5211 clones were determined. Fish were treated by single intraperitoneal injection with 50 micrograms cadmium chloride per kilogram body weight, a dose relevant to environmental exposures, and hepatic gene expression changes were determined at 1, 2, 4, 8, and 16 days postinjection in comparison to saline-treated controls. Gene expression responses were confirmed by real-time reverse transcription polymerase chain reaction (RT−PCR). Blast2GO gene ontology analysis highlighted a general induction of the unfolded protein response, response to oxidative stress, protein synthesis, transport, and degradation pathways, while apoptosis, cell cycle, cytoskeleton, and cytokine genes were also affected. Transcript levels of cytochrome P450 1A (CYP1A) were repressed and vitellogenin altered, real-time PCR showed induction of metallothionein. We thus describe the establishment of a useful resource for ecotoxicogenomics and the determination of the temporal molecular responses to cadmium, a prototypical heavy metal pollutant.
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5211 clonesRTliver cDNA libraryTranscript levels16 days postinjectionmetal pollutantintraperitoneal injectiongene expression responseshepatic gene expression changesPCRdegradation pathwayscytokine genesprotein responseLow Dose.Weinductionkilogram body weightCYP 1Acytochrome P 450 1DNA sequencesGENIPOLtranscription polymerase chain reactionTemporal Transcriptional Responsesoxidative stressprotein synthesis2GO50 micrograms cadmium chloridesentinel fish speciesPlatichthys flesuscell cyclesuppressive subtractive hybridization