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Trapping of Intermediates with Substrate Analog HBOCoA in the Polymerizations Catalyzed by Class III Polyhydroxybutyrate (PHB) Synthase from Allochromatium Vinosum
journal contribution
posted on 2015-05-15, 00:00 authored by Chao Chen, Ruikai Cao, Ruben Shrestha, Christina Ward, Benjamin
B. Katz, Christopher J. Fischer, John M. Tomich, Ping LiPolyhydroxybutyrate
(PHB) synthases (PhaCs) catalyze the formation
of biodegradable PHB polymers that are considered as an ideal alternative
to petroleum-based plastics. To provide strong evidence for the preferred
mechanistic model involving covalent and noncovalent intermediates,
a substrate analog HBOCoA was synthesized chemoenzymatically. Substitution
of sulfur in the native substrate HBCoA with an oxygen in HBOCoA enabled
detection of (HB)nOCoA (n = 2–6) intermediates when the polymerization was catalyzed
by wild-type (wt-)PhaECAv at 5.84 h–1. This extremely slow rate is due to thermodynamically
unfavorable steps that involve the formation of enzyme-bound PHB species
(thioesters) from corresponding CoA oxoesters. Synthesized standards
(HB)nOCoA (n = 2–3)
were found to undergo both reacylation and hydrolysis catalyzed by
the synthase. Distribution of the hydrolysis products highlights the
importance of the penultimate ester group as previously suggested.
Importantly, the reaction between primed synthase [3H]-sT-PhaECAv and HBOCoA yielded [3H]-sTet-O-CoA at a rate
constant faster than 17.4 s–1, which represents
the first example that a substrate analog undergoes PHB chain elongation
at a rate close to that of the native substrate (65.0 s–1). Therefore, for the first time with a wt-synthase,
strong evidence was obtained to support our favored PHB chain elongation
model.
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hydrolysis productsPHB chain elongation modelPHB chain elongationsubstrate analog HBOCoAClass III PolyhydroxybutyrateSubstrate Analog HBOCoAsubstrate analogester groupnoncovalent intermediatesPolymerizations CatalyzedSynthesized standardssynthasePHB polymersCoA oxoestersAllochromatium VinosumPolyhydroxybutyratesubstrate HBCoA
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