Metal Recognition of Septapeptides via Polypod Molecular Architecture Ersin Emre Oren Candan Tamerler Mehmet Sarikaya 10.1021/nl048425x.s001 https://acs.figshare.com/articles/journal_contribution/Metal_Recognition_of_Septapeptides_via_Polypod_Molecular_Architecture/3297517 The understanding of the nature of recognition of inorganic materials by proteins is one of the core elements of and has profound implications in biological materials science and engineering. Using combinatorial display methods, a considerable number of short polypeptides have recently been selected with affinity to engineering materials. During these selections, more than several polypeptides are identified with binding specificity to a chosen inorganic material. Understanding the nature of surface recognition of materials by polypeptides is essential for rational design and biomimetic engineering of these inorganic-binding polypeptides for use as linkers, catalyzers, and growth modifiers in nanotechnology and nanobiotechnology. Although there may not be direct homology among the amino acids constituting the polypeptides, their function may come from conserved molecular architecture. Here we study crystallographic surface recognition of platinum metal-binding septapeptides by conformational analysis. We find that the septapeptides conform into certain molecular architectures containing multiple protrusions (polypods) that spatially match with the crystallographic metal surfaces. While the physical recognition may originate from how well the molecular polypods spatially match a given crystallographic surface, the degree of binding may be due to the reactive groups that form the polypods, e.g., charged or polar groups (e.g., hydroxyl and amine). These results are highly consistent with the experimental binding characteristics of the Pt binders with various degrees of affinities. 2005-03-09 00:00:00 g ., hydroxyl g ., charged direct homology among conserved molecular architecture amino acids constituting given crystallographic surface crystallographic metal surfaces experimental binding characteristics function may come chosen inorganic material biological materials science platinum metal binding specificity binding septapeptides binding may surface recognition various degrees spatially match septapeptides conform reactive groups rational design pt binders profound implications polar groups metal recognition inorganic materials highly consistent growth modifiers core elements considerable number conformational analysis amine ).