10.1021/bi802029t.s002
Robert W. Herbst
Robert W.
Herbst
Abigail Guce
Abigail
Guce
Peter A. Bryngelson
Peter A.
Bryngelson
Khadine A. Higgins
Khadine A.
Higgins
Kelly C. Ryan
Kelly C.
Ryan
Diane E. Cabelli
Diane E.
Cabelli
Scott C. Garman
Scott C.
Garman
Michael J. Maroney
Michael J.
Maroney
Role of Conserved Tyrosine Residues in NiSOD Catalysis: A Case of Convergent Evolution
American Chemical Society
2009
EPR
WT
nickel center
Y 9F
enzyme exhibits saturation behavior
Y 9F Y 62F Y 9F
access
D 3A
Kinetic investigations show
NiSOD
proton
strategy
redox
mV
mutation repositions Tyr 9
pulse radiolytic generation
Convergent EvolutionSuperoxide dismutases
Conserved Tyrosine Residues
protein
NHE
anion binding site
SOD
D 3A Structural aspects
2009-04-21 00:00:00
Journal contribution
https://acs.figshare.com/articles/journal_contribution/Role_of_Conserved_Tyrosine_Residues_in_NiSOD_Catalysis_A_Case_of_Convergent_Evolution/2862430
Superoxide dismutases rely on protein structural elements to adjust the redox potential of the metallocenter to an optimum value near 300 mV (vs NHE), to provide a source of protons for catalysis, and to control the access of anions to the active site. These aspects of the catalytic mechanism are examined herein for recombinant preparations of the nickel-dependent SOD (NiSOD) from <i>Streptomyces coelicolor</i> and for a series of mutants that affect a key tyrosine residue, Tyr9 (Y9F-, Y62F-, Y9F/Y62F-, and D3A-NiSOD). Structural aspects of the nickel sites are examined by a combination of EPR and X-ray absorption spectroscopies, and by single-crystal X-ray diffraction at ∼1.9 Å resolution in the case of Y9F- and D3A-NiSODs. The functional effects of the mutations are examined by kinetic studies employing pulse radiolytic generation of O<sub>2</sub><sup>−</sup> and by redox titrations. These studies reveal that although the structure of the nickel center in NiSOD is unique, the ligand environment is designed to optimize the redox potential at 290 mV and results in the oxidation of 50% of the nickel centers in the oxidized hexamer. Kinetic investigations show that all of the mutant proteins have considerable activity. In the case of Y9F-NiSOD, the enzyme exhibits saturation behavior that is not observed in wild-type (WT) NiSOD and suggests that release of peroxide is inhibited. The crystal structure of Y9F-NiSOD reveals an anion binding site that is occupied by either Cl<sup>−</sup> or Br<sup>−</sup> and is located close to but not within bonding distance of the nickel center. The structure of D3A-NiSOD reveals that in addition to affecting the interaction between subunits, this mutation repositions Tyr9 and leads to altered chemistry with peroxide. Comparisons with Mn(SOD) and Fe(SOD) reveal that although different strategies for adjusting the redox potential and supply of protons are employed, NiSOD has evolved a similar strategy for controlling the access of anions to the active site.